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  1. Introduction_to_Python_for_WWS Introduction_to_Python_for_WWS Public

    Jupyter Notebook 1

  2. gelidonyamr gelidonyamr Public

    This Nextflow pipeline, gelidonyAMR, has been developed for analyzing Salmonella Infantis genomes, including genome assembly, antimicrobial resistance (AMR) profiling, MLST and cgMLST typing. It is…

    Nextflow 2

  3. Lymra-Ont Lymra-Ont Public

    This software can be used to analyse Ont-Monkeypox data.

    Python

  4. GenomePlatform GenomePlatform Public

    Automated bacterial genomic analysis · AI clinical interpretation · PCR primer design

    Python 1

  5. phage_analysis phage_analysis Public

    Bacteriophage discovery & characterization pipeline (Nextflow DSL2) — FastQC, Kraken2, SPAdes, VirSorter2, CheckV, BACPHLIP, Phrokka, Prokka, vContact2, vHULK, BLAST

    Nextflow 2

  6. pha4ge/pipeline-resources pha4ge/pipeline-resources Public

    Bioinformatics Pipeline and Visualization resources

    65 36